Real-time quantitative proteomics with Devin Schwepp‪e‬ the bioinformatics chat

    • Life Sciences

In this episode, Jacob Schreiber interviews Devin Schweppe about
the analysis of mass spectrometry data in the field of proteomics. They begin
by delving into the different types of mass spectrometry methods, including MS1,
MS2, and, MS3, and the reasons for using each. They then discuss a recent paper
from Devin, Full-Featured, Real-Time Database Searching Platform Enables Fast
and Accurate Multiplexed Quantitative Proteomics that involved building a
real-time system for quantifying proteomic samples from MS3, and the types of
analyses that this system allows one to do.






Links:



Full-Featured, Real-Time Database Searching Platform Enables Fast and Accurate Multiplexed Quantitative Proteomics (Devin K. Schweppe, Jimmy K. Eng, Qing Yu, Derek Bailey, Ramin Rad, Jose Navarrete-Perea, Edward L. Huttlin, Brian K. Erickson, Joao A. Paulo, and Steven P. Gygi)
Benchmarking the Orbitrap Tribrid Eclipse for Next Generation Multiplexed Proteomics (Qing Yu, Joao A Paulo, Jose Naverrete-Perea, Graeme C McAlister, Jesse D Canterbury, Derek J Bailey, Aaron M Robitaille, Romain Huguet, Vlad Zabrouskov, Steven P Gygi, Devin K Schweppe)
Improved Monoisotopic Mass Estimation for Deeper Proteome Coverage (Ramin Rad, Jiaming Li, Julian Mintseris, Jeremy O’Connell, Steven P. Gygi, and Devin K. Schweppe)
Schweppe Lab Website (Hiring!)

In this episode, Jacob Schreiber interviews Devin Schweppe about
the analysis of mass spectrometry data in the field of proteomics. They begin
by delving into the different types of mass spectrometry methods, including MS1,
MS2, and, MS3, and the reasons for using each. They then discuss a recent paper
from Devin, Full-Featured, Real-Time Database Searching Platform Enables Fast
and Accurate Multiplexed Quantitative Proteomics that involved building a
real-time system for quantifying proteomic samples from MS3, and the types of
analyses that this system allows one to do.






Links:



Full-Featured, Real-Time Database Searching Platform Enables Fast and Accurate Multiplexed Quantitative Proteomics (Devin K. Schweppe, Jimmy K. Eng, Qing Yu, Derek Bailey, Ramin Rad, Jose Navarrete-Perea, Edward L. Huttlin, Brian K. Erickson, Joao A. Paulo, and Steven P. Gygi)
Benchmarking the Orbitrap Tribrid Eclipse for Next Generation Multiplexed Proteomics (Qing Yu, Joao A Paulo, Jose Naverrete-Perea, Graeme C McAlister, Jesse D Canterbury, Derek J Bailey, Aaron M Robitaille, Romain Huguet, Vlad Zabrouskov, Steven P Gygi, Devin K Schweppe)
Improved Monoisotopic Mass Estimation for Deeper Proteome Coverage (Ramin Rad, Jiaming Li, Julian Mintseris, Jeremy O’Connell, Steven P. Gygi, and Devin K. Schweppe)
Schweppe Lab Website (Hiring!)

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