R Weekly Highlights Eric Nantz

Bringing interactivity to a staple graphical display in the genomics space, how one team is taking the box approach to sharing and developing modular R code, and a set of intriguing benchmarks with the newly-releaed duckplyr that have your hosts thinking of many possibilities.
Episode Links
This week's curator: Jon Carroll - @jonocarroll@fosstodon.org (Mastodon) & @carroll_jono (X/Twitter)Interactive volcano plots with the ggiraph R packageModular R code for analytical projects with {box}Kicking tyresEntire issue available at rweekly.org/2024-W17Supplement Resources
How to interpret a volcano plot https://biostatsquid.com/volcano-plot/Source code behind Tim's {duckplyr} and {data.table} benchmarks https://git.sr.ht/~tim-taylor/duckplyr-benchmarksAttach to a DuckDB Database over HTTPS or S3 https://duckdb.org/docs/guides/networkcloudstorage/duckdboverhttpsors3Supporting the show
Use the contact page at https://rweekly.fireside.fm/contact to send us your feedbackR-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.A new way to think about value: https://value4value.info Get in touch with us on social media
 Eric Nantz: @rpodcast@podcastindex.social (Mastodon) and @theRcast (X/Twitter) Mike Thomas: @mikethomas@fosstodon.org (Mastodon) and @mikeketchbrook (X/Twitter) Music credits powered by OCRemix
Snow Cone Heaven - Ice Climber - Mazedude - https://ocremix.org/remix/OCR01176Cleaning Out Axis - Batman (NES) - Midee - https://ocremix.org/remix/OCR03008

Another way to hop on LLM train with the chattr package, a clever use of defensive programming to get to those warnings in your tests faster, and a major milestone for the R-Hub project.
Episode Links
This week's curator: Tony Elhabr - @tonyelhabr@skrimmage.com (Mastodon) & @TonyElHabr (X/Twitter)Chat with AI in RStudioTest warnings fasterR-hub v2Entire issue available at rweekly.org/2024-W16Supplement Resources
R/Pharma 2023 presentation by Edgar Ruiz (GitHub Copilot in RStudio) - https://youtu.be/-Fjb8LZmTSIThe 2024 Appsilon Shiny Conference is just days away! https://www.shinyconf.com/Supporting the show
Use the contact page at https://rweekly.fireside.fm/contact to send us your feedbackR-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.A new way to think about value: https://value4value.info Get in touch with us on social media
 Eric Nantz: @rpodcast@podcastindex.social (Mastodon) and @theRcast (X/Twitter) Mike Thomas: @mikethomas@fosstodon.org (Mastodon) and @mikeketchbrook (X/Twitter) Music credits powered by OCRemix
Memories of a Master - Street Fighter II: The World Warrior - Captain Hogan - https://ocremix.org/remix/OCR02268Higgins Goes to Miami - Adventure Island - virt - https://ocremix.org/remix/OCR00461

The Nix and R train rolls on with automated caching, a collection of big improvements landing in webR, and how hand-crafted visualizations bring fundamental dplyr grouping operations to life.
Episode Links
This week’s curator: Jon Calder (@jonmcalder) (X/Twitter)Reproducible data science with Nix, part 11 – build and cache binaries with Github Actions and CachixwebR 0.3.1Visualizing {dplyr}’s mutate(), summarize(), group_by(), and ungroup() with animations: Visually explore how {dplyr}’s more complex core functions work together to wrangle dataEntire issue available at rweekly.org/2024-W15Supplement Resources
Bruno’s unit test involving {tidyselect} https://raw.githack.com/b-rodrigues/nixpkgs-r-updates-fails/targets-runs/output/r-updates-fails.htmlCachix https://www.cachix.org/R/Medicine Call for Abstracts Open https://www.r-consortium.org/events/2024/04/05/r-medicine-coming-june-10-14-2024Survival analysis for time-to-event data with tidymodels https://www.tidyverse.org/blog/2024/04/tidymodels-survival-analysis/Supporting the show
Use the contact page at https://rweekly.fireside.fm/contact to send us your feedbackR-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.A new way to think about value: https://value4value.infoGet in touch with us on social media Eric Nantz: @rpodcast@podcastindex.social (Mastodon) and @theRcast (X/Twitter)Mike Thomas: @mike_thomas@fosstodon.org (Mastodon) and @mike_ketchbrook (X/Twitter)Music credits powered by OCRemix
Sun Ra - Ragnarok Online - Anthony Lofton, Joshua Morse - https://ocremix.org/remix/OCR01811Chopinesque Kirby - Kirby’s Dream Land - Bladiator - https://ocremix.org/remix/OCR01257

Taking the tradition of spring cleaning your R session to a nefarious direction, how a little R and automation crafted together helps with bill payments, and the tried-and-true method of simulation in action to investigate time-to-event inference statistics.
Episode Links
This week’s curator: Ryo Nakagawara - @R_by_Ryo) (X/Twitter) & @R_by_Ryo@mstdn.social (Mastodon)I Made R Text For MeStop Jenny committing arsonThe log-rank Test Assumes More Than the Cox ModelEntire issue available at rweekly.org/2024-W14Supplement Resources
Linux Unplugged episode 156: The xz Backdoor Exposed https://www.jupiterbroadcasting.com/show/linux-unplugged/556/Pushbullet https://www.pushbullet.com/{rpushbullet} R interface to the awesome Pushbullet service https://github.com/eddelbuettel/rpushbulletMike’s PDF quarto reports in devcontainers GitHub repo https://github.com/ketchbrookanalytics/quarto-pdf-devAligning Beliefs and Profession: Using R in Protecting the Penobscot Nation’s Traditional Lifeways https://www.r-consortium.org/blog/2024/03/27/aligning-beliefs-and-profession-using-r-in-protecting-the-penobscot-nations-traditional-lifewaysUsing Data to Protect Traditional Lifeways https://www.youtube.com/watch?v=2PjOSBHRm74Supporting the show
Use the contact page at https://rweekly.fireside.fm/contact to send us your feedbackR-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.A new way to think about value: https://value4value.infoGet in touch with us on social media Eric Nantz: @rpodcast@podcastindex.social (Mastodon) and @theRcast (X/Twitter)Mike Thomas: @mike_thomas@fosstodon.org (Mastodon) and @mike_ketchbrook (X/Twitter)Music credits powered by OCRemix
Heart’s Lullaby - Final Fantasy V - RebeccaETripp, Gamer of the Winds, Rahul Vanamali, Teil Buck - https://ocremix.org/remix/OCR04572Tails and the Music Maker - Picolescence - zircon - https://ocremix.org/remix/OCR02176

How a recent pivot in one of the most popular testing frameworks in R unlocks mocking once again, bringing robust grammar checks to your R development environment with rspell, and flex your Shiny and HTML design muscles with flexbox.


Episode Links



This week's curator: Batool Almarzouq - @batool664 (X/Twitter)
Update on mocking for testing R packages
{rspell} Are you writing in a foreign language? The RStudio spelling dictionary setting is not sufficient to correct grammar errors. Try the {rspell} package to grammar-proof your notebooks and documentation straight on RStudio without copying-pasting.
3MW (Aligning content with flexboxes)
Entire issue available at rweekly.org/2024-W13


Supplement Resources



testthat 3.2.0 re-introduced mocking after it was removed in 2019. The PR with Hadley's commentary https://github.com/r-lib/testthat/pull/1739#issuecomment-1428027869


Supporting the show



Use the contact page at https://rweekly.fireside.fm/contact to send us your feedback
R-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.
A new way to think about value: https://value4value.info
Get in touch with us on social media


Eric Nantz: @rpodcast@podcastindex.social (Mastodon) and @theRcast (X/Twitter)
Mike Thomas: @mike_thomas@fosstodon.org (Mastodon) and @mike_ketchbrook (X/Twitter)



Music credits powered by OCRemix



Kannonball - Donkey Kong Country 2: Diddy Kong's Quest - The Good Ice - https://ocremix.org/remix/OCR04571
The Art of Zoning Out - Pokemon Scarlet - timaeus222 - https://ocremix.org/remix/OCR04570

An honest take on common patterns and anti-patterns for re-use of data analyses that hit a bit too close to home for your hosts, a cautionary tale of garbage online references pretending to be authentic material, and a new (human-created) cheat sheet with terrific best practices taking front and center.


Episode Links



This week's curator: Sam Parmar - @parmsam_ (Twitter) & @parmsam@fosstodon.org (Mastodon)
Patterns and anti-patterns of data analysis reuse
$%@! R help from $%@! AI
Best Practice for R :: Cheat Sheet
Entire issue available at rweekly.org/2024-W12


Additional Links



Jon Harmon's request for additional R4DS funding: https://fosstodon.org/@R4DSCommunity/112099679313058951
Linux Unplugged Episode 554: SCaLEing Nix https://www.jupiterbroadcasting.com/show/linux-unplugged/554/


Supporting the show



Use the contact page at https://rweekly.fireside.fm/contact to send us your feedback
R-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.
A new way to think about value: https://value4value.info
Get in touch with us on social media


Eric Nantz: @theRcast (Twitter) and @rpodcast@podcastindex.social (Mastodon)
Mike Thomas: @mike_ketchbrook (Twitter) and @mike_thomas@fosstodon.org (Mastodon)



Music credits powered by OCRemix



A Crook Man's Eyes - Mega Man 5 - Nightswim - http://ocremix.org/remix/OCR03679
Plastik Skies - VROOM: Sega Racing - Palpable, Diodes - https://ocremix.org/remix/OCR03726